VISDB Viral Integration Site DataBase

VIS ID

TVIS10017771

Fusion event

HBV-FGG integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

437

Integrated sequence

CCAACCTCTTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGT| |TGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGC

Chromosome

chr4

Cytoband

q32.1

Reference genome

Start

End

155526071/154604919 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-144-3p ; hsa-mir-29c-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-623 ; hsa-mir-4755-3p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-6866-3p ; hsa-mir-188-5p

Nearest miRNA

hsa-mir-12113/Upstream/2068403; hsa-mir-1305/Downstream/4523883;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/54389, chr4-CpG: 39/Downstream/21913

Upstream sequence

GTACTCCTCAGAACTGGAAAAGCACCAATTATATATAGATGAGACTGTGAATAGCAATATCCCAACTAACCTTCGTGTGCTTCGTTCAATCCTGGAAAAC

Downstream sequence

GTTGCTGTCCTTCTCCAATTGTGAGTCTGTTGAATGGGATTATCTTCATAGTGGTTTTCTTCATGGAATACCACCGGGTTTTCCAAGTGGCCCAAATAAT