VISDB Viral Integration Site DataBase

VIS ID

TVIS10017772

Fusion event

HBV-NONO integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1748

Integrated sequence

CTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAG| |GAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATG

Chromosome

chrX

Cytoband

q13.1

Reference genome

Start

End

70520535/71300685 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-1301-3p ; hsa-mir-744-5p ; hsa-mir-505-5p ; hsa-mir-296-3p ; hsa-mir-30c-2-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-148b-3p ; hsa-mir-149-5p ; hsa-mir-148a-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-1277-5p ; hsa-mir-3179 ; hsa-mir-3675-5p ; hsa-mir-3936 ; hsa-mir-6864-5p ; hsa-mir-6881-5p ; hsa-mir-6890-5p ; hsa-mir-8060 ; hsa-mir-3117-3p ; hsa-mir-7515 ; hsa-mir-8076 ; hsa-mir-1197 ; hsa-mir-3180-5p ; hsa-mir-6868-3p ; hsa-mir-4650-3p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-6069 ; hsa-mir-6504-5p ; hsa-mir-8086 ; hsa-mir-3064-5p ; hsa-mir-4794 ; hsa-mir-664a-5p ; hsa-mir-554 ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4685-5p ; hsa-mir-6837-5p ; hsa-mir-7113-5p ; hsa-mir-6755-5p ; hsa-mir-5003-3p ; hsa-mir-1207-5p ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3612 ; hsa-mir-4438 ; hsa-mir-4514 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4692 ; hsa-mir-4756-3p ; hsa-mir-4763-3p ; hsa-mir-5095 ; hsa-mir-5186 ; hsa-mir-5694 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7151-3p ; hsa-mir-7161-3p ; hsa-mir-940 ; hsa-mir-4252

Nearest miRNA

hsa-let-7f-2/Upstream/1277762; hsa-mir-105-1/Downstream/2917692;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/16572, chrX-CpG: 86/Downstream/65180

Upstream sequence

AAACTGTAAAATAATTACTCCTGAAAAgtcctgctgaagaaatctttgcctactccaaggtcacaaagacattctccacaaactgagatctacgtacata

Downstream sequence

CCCCCAATGACCTTAGCCCCATTGCTCCATTCACTCCCAGGTGAGAATTCAGGCAAACGTCCACAAAGGTCACAGGCAGCGTACATACGGTTCTGTTATA