VISDB Viral Integration Site DataBase

VIS ID

TVIS10017773

Fusion event

HBV-RBP7 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;

Start

2088

Integrated sequence

TCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTAAGGCAAGCTATTCTGTGTTGGGG| |TGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTAGTAGTAAGCTATGTCAATGTTAATATGGGCCTAAAA

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

10075876/10015818 (Hg38)

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p

Nearest miRNA

hsa-mir-12136/Upstream/48360; hsa-mir-101-1/Downstream/2013340;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/17768, chr1-CpG: 84/Downstream/16656

Upstream sequence

aaaaagcgacgtcgctatgaacgcttggccgccacaagccagttatccctgtggtaacttttctgacacctcctgcttaaaacccaaaaggtcagaagga

Downstream sequence

tcgtgaggccccgctttcacggtctgtattcgtactgaaaatcaagatcaagcgagcttttgcccttctgctccacgggaggtttctgtcctccctgagc