VISDB Viral Integration Site DataBase

VIS ID

TVIS10017777

Fusion event

HBV-CRP integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1250

Integrated sequence

TTGCTCGGCAACGGTCAGGTCTTTGCCAAGTATTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGT| |GGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTC

Chromosome

chr1

Cytoband

q23.2

Reference genome

Start

End

159682393/159712603 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-1184 ; hsa-mir-1273g-3p ; hsa-mir-4252 ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-7156-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2776359; hsa-mir-1182/Downstream/187376;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/523895, chr1-CpG: 87/Downstream/68023

Upstream sequence

TTCATTCCAGTAGGGCATGCATACTGAATCTTATTTATGTGCAAggtgggagggaagatgaaagcggggggggcggggggggggcgggaggggcaggggt

Downstream sequence

gcaggaagagaggaggggtggagggagACATAACACAACATGTACCCTACTTGACTTTTTTCCTTTAGAAACCAGCCTCACATCAATGAACTCAAAGCTT