VISDB Viral Integration Site DataBase

VIS ID

TVIS10017778

Fusion event

HBV-KCNT2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1781

Integrated sequence

GTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGC| |TGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTG

Chromosome

chr1

Cytoband

q31.3

Reference genome

Start

End

196524483/196555353 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-4775 ; hsa-mir-500a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/3418770; hsa-mir-1182/Downstream/27060;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3433259, chr1-CpG: 24/Downstream/53225

Upstream sequence

CAAATCTGACTGAAACCACTCAAAAACATACTTTAATCTATTAATGAAAACAGAGGCTCAGATTTAAGAAAGTTATATCAAATAAAGTTCAAGTTGTATA

Downstream sequence

TGCCAACTAACAATTAGCAAATTTATAGCAATCAATCACATTAAGACTTTAAATtgtgtgtgtgtttgtgagtgtgagtgtgtgtgtgtgtgtgtTTCAC