VISDB Viral Integration Site DataBase

VIS ID

TVIS10017780

Fusion event

HBV-DUSP10 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1741

Integrated sequence

CCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTT| |GGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCA

Chromosome

chr1

Cytoband

q41

Reference genome

Start

End

221882993/221709651 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-98-5p ; hsa-mir-92a-3p ; hsa-mir-129-5p ; hsa-mir-450a-5p ; hsa-mir-4446-5p ; hsa-mir-4755-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6883-3p ; hsa-mir-642b-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-3124-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-5088-3p ; hsa-mir-454-5p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-670-3p ; hsa-mir-6818-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-4289 ; hsa-mir-5196-3p ; hsa-mir-7151-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1509032; hsa-mir-1182/Downstream/2547389;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/813834, chr1-CpG: 128/Downstream/32481

Upstream sequence

ACACACCTTTGCCTTATTAAAAGTCAAACAGAAATAAACAACACAGTCCATGTGTGTCATAGAAAGGGATTTCAAATAGGCCCAAAGTCAATCCTACCTC

Downstream sequence

TGATATTCAGAGCTTCAGACTTTTTCTCTTTTTTCATCATGTCTTCTGGCTCATTCTGGGTGTTGAAGGAATCACCTGCATTCAAAGAAGAAACCTTGTG