VISDB Viral Integration Site DataBase

VIS ID

TVIS10017790

Fusion event

HBV-ANKRD10 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;

Start

1915

Integrated sequence

GCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCG| |TATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGTGATCTCCTCGACACCGCCTCTGCTCTGTATC

Chromosome

chr13

Cytoband

q34

Reference genome

Start

End

111546652/110894305 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-19b-3p ; hsa-mir-218-5p

Nearest miRNA

hsa-mir-1267/Upstream/553276; hsa-mir-4502/Downstream/2368615;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/19464, chr13-CpG: 200/Downstream/19834

Upstream sequence

ATTAAGAAGAAAACACGCAGGGAATCAAAGACATTCCTAACCTTGAAACAACTCACCGGCCTATGTTCCAACTTCAAAATAATTTACTTTTGCTTTAAAA

Downstream sequence

CAAATGAACCTTCCACCTCAGATAATAAGGTGCAACGGTAATCAATTTTGAACTCAATGACTACCAGATTCAATACACCAATGTTTATAATCAATACTTT