VISDB Viral Integration Site DataBase

VIS ID

TVIS10017791

Fusion event

HBV-RIN3 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

174

Integrated sequence

CCGGAACAGTAAACCCTGTTCCGACTACTGCCTCTCCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAATATGGAGAGCACCACATCAGG| |ATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAAT

Chromosome

chr14

Cytoband

q32.12

Reference genome

Start

End

93154588/92688243 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-6734-5p ; hsa-mir-4710 ; hsa-mir-6825-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p

Nearest miRNA

hsa-mir-1260a/Upstream/15421953; hsa-mir-1185-1/Downstream/1259983;

Nearest TSS

Nearest CpG islands

chr14-CpG: 129/Target, None/Upstream, None/Downstream

Upstream sequence

GAACTTTCATACAAATACTTAAAGGCAATAACAAAAAATGGAATTTCCTGAAAAACTCCCAATGGAATCCAAATCTGTTTCATCATCCTTCTGAAGTACA

Downstream sequence

TTCCTGTGAGGCCCTCCCGGGGCGCCTCCCCTCACCCCCAGGCGCACGTCTGGCCCCGCCTCTGGCTGCGCACTCCCGACCGCGACGTCCACGCAGCAGA