FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017810
Fusion event
HBV-FN1 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
pre-S1/pre-S2/S;Polymerase;
Start
458
Integrated sequence
TGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAG| |GTATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCC
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216240117/215375394 (Hg38)
Location type
splicing
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1617235; hsa-mir-1244-1/Downstream/2525119;
Upstream sequence
gggggggaggggggggggggaggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggagggggggg
Downstream sequence
TGAAAGAAAACAAAATTAAGTCTCTAAGAAGGCAAATAACCAAGAAAATTACTCCCACACTTTTCTCCCGAGCCGTTCTAAACACACTTAAAAGAATCTG
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate