VISDB Viral Integration Site DataBase

VIS ID

TVIS10017822

Fusion event

HBV-ARMC8 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

core protein;X protein;

Start

1824

Integrated sequence

AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAA

Chromosome

chr3

Cytoband

q22.3

Reference genome

Start

End

137948268/138229426 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-let-7a-3p ; hsa-let-7f-5p ; hsa-let-7c-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-let-7g/Upstream/3791520; hsa-mir-1224/Downstream/13336450;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/41407, chr3-CpG: 56/Downstream/99925

Upstream sequence

ATTTAAGTTTGGCTCTAAACCAAACGAGATTTCCTTAGCACAGTGCTTTGAAATCTTTTTCATATAATAGCACCCATAGAAAAAGTTGCTCAGTGCTGAT

Downstream sequence

cttatgctattacaaaacagtgctgcaaaaaataccttgtatatgaggcattttataagaaataaaattttggggtcaaagaatatatgtatttgtaatt