VISDB Viral Integration Site DataBase

VIS ID

TVIS10017828

Fusion event

HBV-FGG integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1774

Integrated sequence

CAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACT| |GGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCA

Chromosome

chr4

Cytoband

q32.1

Reference genome

Start

End

155533015/154611863 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-144-3p ; hsa-mir-29c-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-623 ; hsa-mir-4755-3p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-6866-3p ; hsa-mir-188-5p

Nearest miRNA

hsa-mir-12113/Upstream/2075347; hsa-mir-1305/Downstream/4516939;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/61333, chr4-CpG: 39/Downstream/14969

Upstream sequence

TGGCCTCTATTAACAAGTGTTATTAAGAAATTAGGTTTGTTATGGGCAAATGGATTAACACtataaataatttattttttgtagtataaattattttGAA

Downstream sequence

TTTCCTGGACTTCAAAGTAGCAGCGTCTATCATATCTGTAATATAGGATCAGAGACATAAAAATCCTTAAGCAAATAGAACAACTAAAACAACAGCAAAA