VISDB Viral Integration Site DataBase

VIS ID

TVIS10017836

Fusion event

HBV-WDR31 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1753

Integrated sequence

ATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGAT| |TAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCAT

Chromosome

chr9

Cytoband

q32

Reference genome

Start

End

116091193/113328913 (Hg38)

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6747-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-4485-5p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-7977 ; hsa-mir-383-3p ; hsa-mir-4767

Nearest miRNA

hsa-let-7a-1/Upstream/1396744; hsa-mir-12126/Downstream/880521;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/52964, chr9-CpG: 31/Downstream/11216

Upstream sequence

TACACACTAGAAAGCAGCAAAAAAGAGGACTTCCGATGCTCACAAATTCAGGAACAAGAATATTTTAAAAATCTGAATTATGTTAAGTGGGACATTGGCA

Downstream sequence

TTAGGTATCCCGTTAGCCAACAAGGAAAACCTATAGAGGCGCTTGTGTTCAGCAGATGGCGCTCTTTTACCTAGTTCACAAGAATGATCTTGAAGGTCAT