VISDB Viral Integration Site DataBase

VIS ID

TVIS10017837

Fusion event

HBV-ALG13 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1808

Integrated sequence

CAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT

Chromosome

chrX

Cytoband

q23

Reference genome

Start

End

110952933/111709705 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7e-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-526b-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3607-3p ; hsa-mir-1183 ; hsa-mir-548m

Nearest miRNA

hsa-let-7f-2/Upstream/1627487; hsa-mir-105-1/Downstream/1071013;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/27658, chrX-CpG: 19/Downstream/372149

Upstream sequence

CTGTGCCCCAGAATCATGCCCCCTTTGCTGTTGTTGTCCGCCTTCATTTTTTTAGTGAGTGTCTTGGGAGGAGCCCCAGGACACAACCCCGACCGCAGGA

Downstream sequence

TTCTGGCCCTTGCAGTGCTATTTGTTTCTTCTGTTTATTGTGGGTATTCGCCTGCTGTTCGAGTTTTACTCCTAATTTTCTCAACTGGTTTCAGTGAATT