VISDB Viral Integration Site DataBase

VIS ID

TVIS10017852

Fusion event

HBV-POFUT2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1631

Integrated sequence

CTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGA| |CAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACT

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

46703212/45283297 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-454-3p ; hsa-mir-580-3p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-1178-5p ; hsa-mir-590-3p ; hsa-mir-100-3p ; hsa-mir-548e-5p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-1273f ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4802-5p ; hsa-mir-6888-5p ; hsa-mir-486-3p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-6775-5p ; hsa-mir-744-5p ; hsa-mir-5090 ; hsa-mir-3141 ; hsa-mir-7703 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-4252 ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-1273g-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-1184 ; hsa-mir-1250-3p ; hsa-mir-153-5p ; hsa-mir-1827 ; hsa-mir-3157-5p ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4290 ; hsa-mir-4293 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4649-3p ; hsa-mir-4667-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4725-5p ; hsa-mir-485-5p ; hsa-mir-5003-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-521 ; hsa-mir-6761-3p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-940

Nearest miRNA

hsa-let-7c/Upstream/1673308; hsa-mir-6815/Downstream/194969;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/5998, chr21-CpG: 171/Downstream/3479

Upstream sequence

gccggggggagtggggggtgaagacaccgtggcggggggaggcggggtgctgcagggggggcggggggcacccacggtggtggggaggagtgggcggggg

Downstream sequence

gcgcctgaggcggggggggggggacgcatgcggcagggggaggtgggggggCACCTGCGGCAGGGGGAGCAGCCTCAGCAGGCACCTGTAGTACTCGTGC