FGB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017858
Fusion event
HBV-FGB integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
pre-S1/pre-S2/S;Polymerase;
Start
460
Integrated sequence
TCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGT| |ATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCT
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
End
155488866/154567714 (Hg38)
Location type
Exonic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/2031198; hsa-mir-1305/Downstream/4561088;
Upstream sequence
ACTTGCTATTCTGAGTACTGTGATTTTCATTTACTTCTAGCAATACAGGATTACAATTAAGAGGACAAGATCTGAAAATCTCACAAACTATAAAATAATA
Downstream sequence
CTGAGAAGCAAAATACAAAAGTTAGAATCTGATGTCTCAGCTCAAATGGAATATTGTCGCACCCCATGCACTGTCAGTTGCAATATTCCTGTGGTGTCTG
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
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