VISDB Viral Integration Site DataBase

VIS ID

TVIS10017863

Fusion event

HBV-SRPX2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

460

Integrated sequence

TCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGT| |ATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCT

Chromosome

chrX

Cytoband

q22.1

Reference genome

Start

End

99905827/100650830 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-4668-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-3613-3p ; hsa-mir-4307 ; hsa-mir-1265 ; hsa-mir-3180-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6814-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3178 ; hsa-mir-31-5p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4708-3p ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-5006-3p ; hsa-mir-2681-5p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-8065 ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-29a-5p

Nearest miRNA

hsa-let-7f-2/Upstream/5587604; hsa-mir-105-1/Downstream/5988984;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/14033, chrX-CpG: 61/Downstream/80605

Upstream sequence

TTACTGTCCCATGAAGTTATTTAACCAGCGTGTTTATGTATGCTAGAATGGTACCAAGCTGTTGCTGACAAATGATCCATTGGAAGCAGCGCATGGAGGC

Downstream sequence

GGAGGTCCCACAGGCTCCTGCCCTGGACTACCGAGGTAATCTACCCTGCTTCTCAAGCCCAGAAAATCTCTTTTCTGGCCTCAGACCTAGGCCCTTCCCT