VISDB Viral Integration Site DataBase

VIS ID

TVIS10017865

Fusion event

HBV-SGPL1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

1326

Integrated sequence

TCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGGGCGAAACTGCTC| |GGCACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCT

Chromosome

chr10

Cytoband

q22.1

Reference genome

Start

End

72639446/70879689 (Hg38)

Location type

3UTR

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-1226-3p ; hsa-mir-27a-3p ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-216a-3p ; hsa-mir-222-5p ; hsa-mir-27b-3p ; hsa-mir-128-3p ; hsa-mir-936 ; hsa-mir-1204 ; hsa-mir-3129-5p ; hsa-mir-3147 ; hsa-mir-3681-3p ; hsa-mir-4425 ; hsa-mir-4435 ; hsa-mir-8086 ; hsa-mir-139-5p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-548v ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-345-3p ; hsa-mir-3148 ; hsa-mir-125a-5p ; hsa-mir-670-5p ; hsa-mir-1289 ; hsa-mir-2110 ; hsa-mir-2114-5p ; hsa-mir-4319 ; hsa-mir-4324 ; hsa-mir-4271 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4725-3p ; hsa-mir-4768-3p ; hsa-mir-1273f ; hsa-mir-6716-5p ; hsa-mir-6780b-5p ; hsa-mir-218-5p ; hsa-mir-101-3p ; hsa-mir-6832-3p ; hsa-mir-144-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-7158-5p ; hsa-mir-4711-3p ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-4732-3p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-1268b ; hsa-mir-6741-5p ; hsa-mir-1268a ; hsa-mir-7977 ; hsa-mir-6748-5p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-8485 ; hsa-mir-4789-3p ; hsa-mir-3064-3p ; hsa-mir-4640-5p ; hsa-mir-4726-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-4755-3p ; hsa-mir-4524a-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-3918 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-6895-5p ; hsa-mir-3622a-5p ; hsa-mir-4524b-3p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-767-5p ; hsa-mir-873-5p ; hsa-mir-5002-5p ; hsa-mir-7153-3p ; hsa-mir-125b-1-3p

Nearest miRNA

hsa-mir-1265/Upstream/3476279; hsa-mir-107/Downstream/911058;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/63143, chr10-CpG: 55/Downstream/8205

Upstream sequence

GTCACACCTTTCTCAAAAGGCAGACACATGTGGAGAAACCAGACACTTGGCAGACAGACAGTTACATTGCAAAGAAAACAAAAGCAAAGAGTTATTTTAA

Downstream sequence

ACATACGGTACACAGTTGTGCAGTTTGCTAAAACAGATAAACAATATTGTATAATACTACAGAATAGAATTTTGTTTAGTTTTGGATAGTTTTCAGTTAA