Basic Information
VIS ID
TVIS10017872
Fusion event
HBV-LINC00486 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26867494
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
DQ089769.1
Region type
pre-S1/pre-S2/S;Polymerase;
Start
317
Integrated sequence
TTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTTGCAGT| |CCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCT
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33141460/32916393 (Hg38)
End
33141460/32916393 (Hg38)
Location type
ncRNA
Target gene
LINC00486
Nearest miRNA
hsa-mir-1301/Upstream/281062; hsa-mir-10b/Downstream/502123;
Nearest TSS
ENST00000437798/Upstream/33592; ENST00000440786/Downstream/10734;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/288190, chr2-CpG: 164/Downstream/29988
Upstream sequence
GGCCTTTCTTTTGAACATTTTAATTTTTTCCATTTTTTATATCCCCAATTTTCTAAAATATAGATTCATTTATTAGTCACCAACAACGCCTTGACATTAT
Downstream sequence
gggggggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggaggggggggggggaggggggg
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate