Basic Information
VIS ID
TVIS10017873
Fusion event
HBV-LINC00486 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
X protein;Polymerase;
Start
1516
Integrated sequence
TCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGA| |CCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
End
33141531/32916464 (Hg38)
Location type
ncRNA
Target gene
Nearest miRNA
hsa-mir-1301/Upstream/281133; hsa-mir-10b/Downstream/502052;
Upstream sequence
TACACAGTGATGGTATAATCAACTCCAGGTTTAAGGCCGCTGATGGTAGCTGTAGACTTGCTCCCAGGCACAGTGAACTCCTGGACAGGGCTATTTCCTC
Downstream sequence
ggggggggaggggggggggggaggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggggaggggggg
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate