RABGAP1L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017889
Fusion event
HBV-RABGAP1L integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
core protein;X protein;
Start
1824
Integrated sequence
AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAA
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
End
174586709/174617571 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/2472927; hsa-mir-1182/Downstream/1350799;
Upstream sequence
TGAGAGTAAAAACAGACCACATGCAAACTGATCCTTCTTTTTCCCTTCCTCCTTACGCCCTAGGAAATGTTCTGTGAAGGTCAAGTGTGCAAACAGACAT
Downstream sequence
TCCAGAGAGCCTGATCCACATCCAGCAGCAGAGCCCACTTGTGGCTGCAGCTTTATGCCAAATTATATTGCAGACTGAACAGACGTTTATCTATCCCATT
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
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