Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017892
Fusion event
HBV-CFH integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
X protein;
Start
1656
Integrated sequence
GCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATA| |AGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAG
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
End
196627429/196658299 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/75818; hsa-mir-1182/Downstream/2200574;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/49418, chr1-CpG: 29/Downstream/219729
Upstream sequence
GAATCTTCGTTCACGAGGTGGTCGCCTTTCTGGTCTTCTATCAATTATTTTCCCTTCACCCTGAAGTTGTTGATCAGGTCTTCTTCCAACTCGTCTTATT
Downstream sequence
CCTAAAACGATAAGATAACCTGCATAAGCAAATTATTTTTGCAATCCAAAAACTTTAGGCCTGGACTGTCAAAAGCTGCTTCTCTTCCAATCCACTACCA
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.