VISDB Viral Integration Site DataBase

VIS ID

TVIS10017896

Fusion event

HBV-CLMN integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;Polymerase;

Start

1543

Integrated sequence

AATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGG| |TCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCC

Chromosome

chr14

Cytoband

q32.13

Reference genome

Start

End

95659974/95193637 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-4480 ; hsa-mir-4756-3p ; hsa-mir-500b-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-6756-3p ; hsa-mir-5096 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4320 ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-7113-3p ; hsa-mir-3667-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308

Nearest miRNA

hsa-mir-1260a/Upstream/55651; hsa-mir-1185-1/Downstream/4915782;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/35754, chr14-CpG: 79/Downstream/125778

Upstream sequence

aagcttgccctgtaaggagtgtctggtgaagggaaggtaaagattataattgcatttctaaggaactaagtgggaagtgggagaaaggagaaaaggagaa

Downstream sequence

ACCATCAGTGTTAATTAATATCTACTTTTCCTTTCTACTCATATTCAATTTACATCATTTTCTCTGGAATAGTTATTTTCTTGCATTATCCCAAATTATT