VISDB Viral Integration Site DataBase

VIS ID

TVIS10017898

Fusion event

HBV-GSDMB integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;Polymerase;

Start

1555

Integrated sequence

GACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTG| |TGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACAT

Chromosome

chr17

Cytoband

q21.1

Reference genome

Start

End

38068618/39912365 (Hg38)

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-5692a

Nearest miRNA

hsa-mir-1180/Upstream/185804; hsa-mir-10226/Downstream/113967;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/43981, chr17-CpG: 78/Downstream/14608

Upstream sequence

TCAGAGAGGTTCCCTGGGTTTCCGGCGACGCCCTCCTTCAAGCGAGGCCGCAGGCTTCGGAGGCGTGCGCTGCTGCTGGGTGTGCAGCCCCCGAGGGGTC

Downstream sequence

TCTCCGATATCTTGATTTTCTGATGGTGGAAGCCCTGGAAACTGCCTGAAATTGTTATTTCTTTGGGTAATCTCACTATCAACTCTCCCGTTGAGTCTAC