VISDB Viral Integration Site DataBase

VIS ID

TVIS10017906

Fusion event

HBV-FN1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1736

Integrated sequence

CTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAG| |GAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCT

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216273477/215408754 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1650595; hsa-mir-1244-1/Downstream/2491759;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/96345, chr2-CpG: 43/Downstream/26790

Upstream sequence

AGCCCAGTTCCTTCCCTAATTCCACCCACTCCAGCTCCTGGAGGTTCCACAAACTCTAGGGGAGGTCATAGCTTCCTCAACGTCTCAGCAACAGCTGGAT

Downstream sequence

agatggaggttcaccatgttggccaggctgatctcgaactcctggcctcaagtgatccaccagcctcagcttcccgaagtgctgagattataggagttag