VISDB Viral Integration Site DataBase

VIS ID

TVIS10017913

Fusion event

HBV-SULT1B1 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;Polymerase;

Start

1567

Integrated sequence

GGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATC| |TGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTT

Chromosome

chr4

Cytoband

q13.3

Reference genome

Start

End

70594547/69728829 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-3622b-5p ; hsa-mir-6809-5p ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-506-5p ; hsa-mir-382-3p ; hsa-mir-8083 ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-493-5p ; hsa-mir-5580-3p ; hsa-mir-6509-5p ; hsa-mir-331-5p ; hsa-mir-5681b ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4678 ; hsa-mir-6787-3p ; hsa-mir-6818-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-6771-3p ; hsa-mir-548as-3p ; hsa-mir-3611 ; hsa-mir-3977 ; hsa-mir-513b-5p ; hsa-mir-4764-5p ; hsa-mir-1252-5p ; hsa-mir-6757-5p ; hsa-mir-7849-3p ; hsa-mir-624-3p ; hsa-mir-302f ; hsa-mir-7154-5p ; hsa-mir-5191 ; hsa-mir-6847-3p ; hsa-mir-490-5p ; hsa-mir-8060 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-4735-5p ; hsa-mir-491-3p ; hsa-mir-7156-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-3682-5p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-3187-3p ; hsa-mir-653-3p ; hsa-mir-4529-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-4643 ; hsa-mir-4531 ; hsa-mir-7847-3p ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-539-5p ; hsa-mir-875-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1265 ; hsa-mir-3914 ; hsa-mir-340-5p ; hsa-mir-6861-5p ; hsa-mir-186-3p ; hsa-mir-885-5p ; hsa-mir-3159 ; hsa-mir-3674 ; hsa-mir-135b-3p ; hsa-mir-6516-3p ; hsa-mir-1206 ; hsa-mir-3121-5p ; hsa-mir-1272 ; hsa-mir-7845-5p ; hsa-mir-4802-3p ; hsa-mir-3662 ; hsa-mir-4693-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-892a ; hsa-mir-4318 ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-4266 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-1253 ; hsa-mir-339-5p ; hsa-mir-6888-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-670-3p ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-644a ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-3190-3p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4289 ; hsa-mir-4302 ; hsa-mir-3163

Nearest miRNA

hsa-mir-12113/Upstream/3451901; hsa-mir-1243/Downstream/6844739;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/1378626, chr4-CpG: 55/Downstream/959308

Upstream sequence

TCAGTATTCTTTTGGAAAAATTAAATGTACTCTTAGAGGGAAAGCGTTGCAAAACTAGCCTTTAAATATAATTGGCAAAGCATTTTGTTTTGTGAGGGTT

Downstream sequence

gtaatcagagctttggcaggttaattaatgtattcagggaatggtgtagcctggataaacctcagatcaatctgaccacaaaagtatgttcttaaccCCC