VISDB Viral Integration Site DataBase

VIS ID

TVIS10017928

Fusion event

HBV-GPR180 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1789

Integrated sequence

CCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCA| |TAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCCACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT

Chromosome

chr13

Cytoband

q32.1

Reference genome

Start

End

95271908/94619654 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-548e-5p ; hsa-mir-4328 ; hsa-mir-6838-5p ; hsa-mir-4786-3p ; hsa-mir-140-3p ; hsa-mir-1972 ; hsa-mir-9-3p ; hsa-mir-551b-5p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-548c-3p ; hsa-mir-4639-5p ; hsa-mir-3157-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-3614-3p ; hsa-mir-29a-5p ; hsa-mir-6504-3p ; hsa-mir-6757-3p ; hsa-mir-496 ; hsa-mir-7977 ; hsa-mir-4446-5p ; hsa-mir-4256 ; hsa-mir-103a-2-5p ; hsa-mir-627-3p

Nearest miRNA

hsa-mir-1297/Upstream/2129434; hsa-mir-1267/Downstream/1807575;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/17339, chr13-CpG: 73/Downstream/82281

Upstream sequence

TAGGCTTCTTTTGTGAAACTTGTTTCCTGCAGGTGATGGTTCATGACAATATCGACACCAGTGATTACTGTGCTTTCGGTACCTTCGCCCTCGGGGCCTT

Downstream sequence

CAGCGGAGGCATTTCCACCAATGAGCGAGTCATCAATGTTACCTTCTGTCCTACTGACCATCTGCATTAAGAAAAAGCAGTATAATTGCAAAAGACACAA