VISDB Viral Integration Site DataBase

VIS ID

TVIS10017929

Fusion event

HBV-ASGR2 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1708

Integrated sequence

TGGAGACCACCGTGAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTT| |CAAAGACTGTGTATTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCA

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

7013095/7109776 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-2467-3p ; hsa-mir-3197 ; hsa-mir-4673 ; hsa-mir-6847-5p ; hsa-mir-4645-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-137 ; hsa-mir-4468 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-451b ; hsa-mir-5586-3p ; hsa-mir-3133 ; hsa-mir-1276 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6828-3p ; hsa-mir-346 ; hsa-mir-3120-5p ; hsa-mir-767-3p ; hsa-mir-5695 ; hsa-mir-6769a-3p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-4446-3p ; hsa-mir-4675 ; hsa-mir-4677-3p ; hsa-mir-4721 ; hsa-mir-4741 ; hsa-mir-7974

Nearest miRNA

hsa-mir-1253/Upstream/91754; hsa-mir-10226/Downstream/113521;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/65574, chr17-CpG: 68/Downstream/63926

Upstream sequence

CTAATGGCAGCTGAGTCTACAGATCCACCATACTCTTATCCTTGGCTTCCGGGAGATATCCCAGTCTTTTATTGAATTTGGAATTCCCTATAGGTGGAAT

Downstream sequence

CTCACATGTGCATATGCATGCTAATGCACACATTCATACTCCCTCCcacacacacacacctgacacacccacacacgtacactcacacacccacGTCTTC