VISDB Viral Integration Site DataBase

VIS ID

TVIS10017938

Fusion event

HBV-ATP13A4 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

pre-S1/pre-S2/S;Polymerase;

Start

3009

Integrated sequence

TCTGGGATTCTTTCCCGGTCACCAGTTGGACCCTGCATTCGGAGCCAATTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATCAATGGCCAGCG| |GCACACCAGGTAGGAGTGGGATCCTTCGGGCCAGGGTTCACTCCACCACACGGCAATCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAG

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

193247712/193529923 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-3p ; hsa-mir-4480 ; hsa-mir-3659 ; hsa-mir-922 ; hsa-mir-759 ; hsa-mir-6513-3p ; hsa-mir-595 ; hsa-mir-4497 ; hsa-mir-1257 ; hsa-mir-3650 ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4790-3p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4478 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-550b-2-5p ; hsa-mir-7703 ; hsa-mir-1287-3p ; hsa-mir-1227-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-5186 ; hsa-mir-4793-3p ; hsa-mir-1251-5p ; hsa-mir-1273g-3p ; hsa-mir-596 ; hsa-mir-4293 ; hsa-mir-5684 ; hsa-mir-5591-3p ; hsa-mir-4679 ; hsa-mir-4286 ; hsa-mir-6729-3p ; hsa-mir-660-5p ; hsa-mir-7843-3p ; hsa-mir-4786-3p

Nearest miRNA

hsa-let-7g/Upstream/3699914; hsa-mir-3137/Downstream/1604583;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/288339, chr3-CpG: 39/Downstream/63112

Upstream sequence

AATAAGTCACATAGACTGAGTTTTAATCTCCAGCATTGGATCTTAGACAGGAAACTAAAGTTCTCTAGGTCTGTGTTCTCTGAAAAGTGGGACAAGTACA

Downstream sequence

TAGGTAAATGCATAAGTCTGTTTGAAGTGGGAAGGGACCCATATCTTAAGATTCCTATAAGCATTCCAGGGCCACCCATGGCACCCCAGTTGGGTTGTTC