VISDB Viral Integration Site DataBase

VIS ID

TVIS10017944

Fusion event

HBV-FLT4 integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

X protein;

Start

1631

Integrated sequence

CTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCGA| |CAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTATTTAAAGACT

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

180076114/180649114 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-1236-3p

Nearest miRNA

hsa-mir-10397/Upstream/633717; hsa-mir-4638/Downstream/394289;

Nearest TSS

Nearest CpG islands

chr5-CpG: 137/Target, None/Upstream, None/Downstream

Upstream sequence

TCCCCGCAAACAGCTTGTTCTCCATGTCGCCGTAGCACAGGCTGCAGAGCAGCGTGGAGAGGATGGAGCCCTGCGGGATCCCCTGGCACTGGACGTAGGA

Downstream sequence

GGCGCGGGGACCCCGCGGGGAAGCGAGTAAGGGCGCGAAGGATCCGGGCTCAGCGCGCAGCCCGGCAGGGCCCGGCTCCGAGGACGCGGAGCCACCGACG