VISDB Viral Integration Site DataBase

VIS ID

TVIS10017951

Fusion event

HBV-RABEPK integration

Validated

No

Detection method

TS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Region type

Polymerase;

Start

842

Integrated sequence

ATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAATCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAC| |TAAAACTAAACGTTGGGGCTACTCCCTTAACTTCATGGGATATGTAATTGGAAGTTGGGGTACCTTACCACAGGAACATATTGTACACAAAATCAAACAA

Chromosome

chr9

Cytoband

q33.3

Reference genome

Start

End

127977077/125214798 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-6505-5p ; hsa-mir-571 ; hsa-mir-4778-3p ; hsa-mir-759 ; hsa-mir-218-2-3p ; hsa-mir-5586-3p

Nearest miRNA

hsa-let-7a-1/Upstream/521000; hsa-mir-12126/Downstream/2475889;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/13952, chr9-CpG: 88/Downstream/25868

Upstream sequence

GAGCCGCCCTGTGCCTCATGCGGCGACCGAGGCGCCCTCGGGAGACGGGCCCTGTCGGGTGTCGAGACGCGAACACGACCCAATGCCAAGAACGGGCGGT

Downstream sequence

GGACTTTGATCCAAATCAGGAAAGACGGCGCCACTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCT