hsa-mir-6507-5p _LIHC.png
PLS3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017952
Fusion event
HBV-PLS3 integration
Validated
No
Detection method
TS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Region type
Polymerase;
Start
1034
Integrated sequence
TCAAACAATGTTTTCGAAAAATTCCTATAAATAGACCTATTGATTGGAAAGTATGTCAACGAATTGTGGGGCTTCTGGGCTTTGCCGCTCCCTTTACACA| |ATGTGGTTACCCAGCATTAATGCCTTTGTATGCATGTATACAAGCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATAT
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
End
114869286/115634974 (Hg38)
Location type
Exonic
Target gene
Nearest miRNA
hsa-let-7f-2/Upstream/811410; hsa-mir-105-1/Downstream/2751420;
Upstream sequence
attacaggggtgagccaccgtgcccaaccTCACTTGCTTCTTATCCTTACACTCCCCCAGCCCCAGAGAAACTGCCACATACACCACAAAAACCAAACAT
Downstream sequence
TGGTTTTGGGACTGCTTTGGCAGATCATTAAGATCGGTTTGTTCGCTGACATTGAATTAAGCAGGAATGAAGGTAATGGAACACAGTCATTCTGGCAGTT
Reference
Chiu, Y. T., et al. Novel pre-mRNA splicing of intronically integrated HBV generates oncogenic chimera in hepatocellular carcinoma. J Hepatol ,2016,64(6): 1256-1264.
Curate