Basic Information
VIS ID
TVIS10017958
Fusion event
HBV-LOC105375228 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1827
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
35111018/35071406 (Hg38)
End
35111018/35071406 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7C
Target gene
LOC105375228
Nearest miRNA
hsa-mir-1183/Upstream/130572; hsa-mir-10399/Downstream/1847951;
Nearest TSS
ENST00000635602/Upstream/33135; ENST00000605778/Downstream/182225;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/33210, chr7-CpG: 97/Downstream/114345
Upstream sequence
TGTAAATGCATTCCTACCATCAGACCCCAAGGGAGACTCCTGCTGGTGTTTGAGGTCTTtaactggcacatgaggcaggcagtactcatagggtgcaatg
Downstream sequence
acacttatctgcaaatcaagaggaaagatcccagaagatactaaccctcctgatagataccttgatctccgacacctgtctgtggtacttgatgatggca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate