Basic Information
VIS ID
TVIS10017959
Fusion event
HBV-chrY integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
951
Host Sequence
Chromosome
chrY
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
26106593/23960446 (Hg38)
End
27855825/25709678 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/10481180;
Nearest TSS
ENST00000430575/Upstream/18824; ENST00000417334/Downstream/18812;
Nearest CpG islands
chrY-CpG: 51/Target, None/Upstream, None/Downstream
Nearby gene
RAB9AP5(-231) ; TRAPPC2P10(+2585) ;
Upstream sequence
ATGCTGGAAAAAGTGAGTCTTCAGTAATGCCCTCATAAATTACAGTCTCATTACACCGAGGTATTTTCTTTTTAACCCTTTTTTTCTTTTCTGCTGTGAA
Downstream sequence
GAAAACCATTACAATTTATAAATGTAAGGTGCCATTATTGAGAAAATATATTCCTCCATGAGTGAATGTGTCCCTTCTCCCACCCACTAATGATACAATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate