Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017963
Fusion event
HBV-XPR1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
926
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
End
180715843/180746707 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-7-5p ; hsa-mir-320b ; hsa-mir-455-3p ; hsa-mir-382-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-205-5p ; hsa-mir-92b-3p ; hsa-mir-493-3p ; hsa-mir-155-5p ; hsa-mir-5189-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-6818-3p ; hsa-mir-4713-5p ; hsa-mir-1251-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-6796-3p
Nearest miRNA
hsa-mir-101-1/Upstream/308317; hsa-mir-1182/Downstream/11969621;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/114027, chr1-CpG: 128/Downstream/165473
Upstream sequence
tgtattgtaaatactgatttacaaatgagtcttttccaccaaagataaccatgtgctagaaggcatggactctccttattcatgttaatatcacagtaac
Downstream sequence
gcaggaagagaggaggggtggagggagACATAACACAACATGTACCCTACTTGACTTTTTTCCTTTAGAAACCAGCCTCACATCAATGAACTCAAAGCTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13