KDM4C _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017967
Fusion event
HBV-KDM4C integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
208
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
6935868/6935868 (Hg38)
End
6935868/6935868 (Hg38)
Location type
Intronic
Target gene
KDM4C
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-409-3p ; hsa-mir-432-5p
Nearest miRNA
hsa-mir-101-2/Upstream/927964; hsa-let-7a-1/Downstream/11637438;
Nearest TSS
ENST00000422679/Upstream/10367; ENST00000494570/Downstream/48413;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/176996, chr9-CpG: 43/Downstream/863487
Nearest cancer related gene
KDM4C(OG, No orient, 0)
Upstream sequence
GAGCCGCCCTGTGCCTCATGCGGCGACCGAGGCGCCCTCGGGAGACGGGCCCTGTCGGGTGTCGAGACGCGAACACGACCCAATGCCAAGAACGGGCGGT
Downstream sequence
ATATTTGGTTGTCCCTTATCATGATTTCCAGTATCCTTGAAACTCAGAGATCAAGGCAGTGATGGTAAGAAATGCTCCCATAGAAGGCAAAACAGGCCAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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