Basic Information
VIS ID
TVIS10017970
Fusion event
HBV-DZANK1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
292
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
18419643/18438999 (Hg38)
End
18419643/18438999 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA20A
Target gene
DZANK1
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-103a-2/Upstream/7789304; hsa-mir-1-1/Downstream/31616;
Nearest TSS
ENST00000382410/Upstream/5234; ENST00000461589/Downstream/9989;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/150238, chr20-CpG: 65/Downstream/27786
Upstream sequence
CTTCCCTGGGTTAATCAATTTCCCTCTAGACAACACAAACTGCAGGCATGTGACTAACTTTGAAAGAACACCCATCATGTGGCTGCTGTCACCCTTGACC
Downstream sequence
aaagattcaatccatagcatggacataacaacaaacccccaaaatacatgaagcaaaaactacaagtcagagttgaggTtaaggttccatctatcacctg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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