NF1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017972
Fusion event
HBV-NF1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
901
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
29549341/31222323 (Hg38)
End
29549341/31222323 (Hg38)
Location type
Intronic
Target gene
NF1
miRNAs that regulate target gene
hsa-mir-10b-5p ; hsa-mir-370-3p ; hsa-mir-20a-3p ; hsa-mir-193b-3p ; hsa-let-7e-5p ; hsa-mir-9-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-193a-3p ; hsa-mir-374a-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-107 ; hsa-mir-514a-5p
Nearest miRNA
hsa-mir-1180/Upstream/127898; hsa-mir-10226/Downstream/312560;
Nearest TSS
ENST00000595228/Upstream/21787; ENST00000466819/Downstream/2760;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/126863, chr17-CpG: 29/Downstream/122994
Nearest cancer related gene
NF1(TSG, No orient, 0)
Upstream sequence
agagatggggtttcgccatgttggccaggctggtcttgaactcctggcctcaaatgatccgctcacctcggcttcccaaagtgctaggattacagatgtg
Downstream sequence
TAATACCAATGCTTTCGATGAATGAATTAATAATGGACACCTGCTTAGAAGAAAAAAATGTATGCAGAATTTTGTGGTCTGCTTCCTAGATTATACAAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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