Basic Information
VIS ID
TVIS10017974
Fusion event
HBV-chr10 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2785
Host Sequence
Chromosome
chr10
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
129391638/127593374 (Hg38)
End
129391638/127593374 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/1773552; hsa-mir-202/Downstream/2249925;
Nearest TSS
ENST00000439456/Upstream/44005; ENST00000388920/Downstream/143861;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/196072, chr10-CpG: 242/Downstream/142772
Upstream sequence
AAATCATCAACAGATTTCAGGTTAAAGTTCTGTAAAATTGTGGTTAGAAATAAAAATAGCTCCATGCGGGCAAGTCCTTCTCCTGCACAAATTCGTTTTC
Downstream sequence
CTGAAGATAACAAAGAAAGGAAGTAGTTACTCCTTGTGTTTAACTGTGACTGTGACAAACAGTCATTTGTGACTTGCACAAACAGAATATGCAGTAAATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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