Basic Information
VIS ID
TVIS10017976
Fusion event
HBV-chr6 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1808
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48434563/48466827 (Hg38)
End
48434563/48466827 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3269057; hsa-mir-10524/Downstream/3677522;
Nearest TSS
ENST00000381078/Upstream/398138; ENST00000335783/Downstream/996364;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/397933, chr6-CpG: 20/Downstream/996394
Upstream sequence
AAAAATATTCAGAATCTGGTAAAAAAAACTAACTTTAGTTACTTCTAAATTGAAGATTAATTCTAGATGATTTAATAGTCAAACATTTTTGGTTGTtgag
Downstream sequence
actatttgcaacaaagtgccaagagtatacaatgaggaaacactgtattgagtctctttttgacagtttcttcaataaatagtgcttggaaaactggata
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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