Basic Information
VIS ID
TVIS10017978
Fusion event
HBV-chr16 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
459
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
22743826/22732505 (Hg38)
End
22743826/22732505 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/1226370; hsa-mir-11401/Downstream/1470611;
Nearest TSS
ENST00000527434/Upstream/119022; ENST00000473392/Downstream/80696;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/159061, chr16-CpG: 175/Downstream/80790
Upstream sequence
GGCTCAGAACAGGCACGCGATAAAAGCCAGCACCGTTggccgggcgcattggctcacgcctgtaatcccagcactttgggaggccaaggcaggtagatca
Downstream sequence
GGGGAGTTTACTTTTCCAcctcattgatgttgaacttgaccatgtgacttgccaatgaggaagtaacagatttgatgtaagctgaggctccgtacttggt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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