Basic Information
VIS ID
TVIS10017980
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1362
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
74726645/74677494 (Hg38)
End
74726645/74677494 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/3135405; hsa-mir-12124/Downstream/536982;
Nearest TSS
ENST00000440867/Upstream/156354; ENST00000608707/Downstream/757854;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/62524, chr3-CpG: 82/Downstream/718067
Upstream sequence
AATAGATTTAACCTTATGTGAAAACTGTCACGTAATATTCTTTGACATAAACATTCAACTCGCTGATACACCTTTGACAGTTTTCAATTATATGGATGAT
Downstream sequence
GTATGAGATATAGTGGTAAACTGGAGGATGAGAGAAAGCTCAGTTGTTTTCTTTTCATCATCCTTCTGCTGAGGGAATTGCTCTATTTCCAAAAATGAGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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