Basic Information
VIS ID
TVIS10017981
Fusion event
HBV-LOC105371357 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1300
Host Sequence
Chromosome
chr16
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
80161550/80127653 (Hg38)
End
80161550/80127653 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA16D
Target gene
LOC105371357
Nearest miRNA
hsa-mir-1225/Upstream/3258634; hsa-mir-11401/Downstream/1257365;
Nearest TSS
ENST00000527434/Upstream/61804; ENST00000566030/Downstream/51476;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/526013, chr16-CpG: 42/Downstream/413191
Upstream sequence
TTTTCTCTTACCTCTGAAGTTAGCTCATTCATCCAACAAATACTTCTTAGGGAGTATATTAGGGAGTATCATTTACCCTCATCTGCCTCCCTCTGTTGCA
Downstream sequence
CAGCAGGGCTGGAGCAAACCTTCTTTGGGTGAAAGAAGATGAGGGTAGAAAGGGTCAGCAAACATTTCCTATAAATAAGCAGATAATAAATATTGTAAtc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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