Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017982
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2067
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
Start
End
31414820/31403499 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/508128; hsa-mir-11401/Downstream/2760079;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/30295, chr16-CpG: 86/Downstream/24071
Upstream sequence
gaatgaataaggcatcaaagaaaaggcacagaggaaagggcactccaggtggaaggaaccctgtgagggaagaggtggaagcaggagggaaTCACCGACC
Downstream sequence
TTTGCACTGATGCAGTACTCAAACCTCCTGAAGATCCACTTCACCTTCACCCAATTCCGGACCAGCCCGAGCCAGCAGAGCCTGGTGGATCCCATCGTCC
Target sequence
GAGTGTCCACATCAAGAGATGGACATCGTCTTCCTGATTGACGGCTCTGGAAGCATTGACCAAAATGACTTTAACCAGATGAAGGGCTTTGTCCAAGCTGTCATGGGCCAGTTTGAGGGCACTGACACCCTGGTGAAGACTGGGCACCTGGGGCTGGGGTTTGGGGGACGGGGGAGGCTGGCCTCGGGGAGGCATCCCGGGAGGGGTGGGGGCAGGCCAGTGAGCCGTGTGTGATGGGGCTGGGGTGGAGAATGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13