Basic Information
VIS ID
TVIS10017986
Fusion event
HBV-chr4 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1827
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
34981/34981 (Hg38)
End
34981/34981 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Downstream/315176;
Nearest TSS
ENST00000502981/Downstream/18304;
Nearest CpG islands
None/Target, None/Upstream, chr4-CpG: 46/Downstream/18323
Upstream sequence
GTGTTGTCTAGTTTTTTACCCTCTGATAATCTGTAAATAAATTTTTGGGCAGAGATACTCTGATCTAATACCCTGAATTATTTTCTGTGTAAAGATATTT
Downstream sequence
gtgatcagtgatctagagcttttttccatatgcttgtttgccacgtttgcttttttttttttttttttttttcttagcccgagtctcgctctgtcaccca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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