Basic Information
VIS ID
TVIS10017987
Fusion event
HBV-chr17 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1625
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
13001658/13098341 (Hg38)
End
13001658/13098341 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/180999; hsa-mir-10226/Downstream/445188;
Nearest TSS
ENST00000595228/Upstream/2433; ENST00000580134/Downstream/208419;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/80092, chr17-CpG: 36/Downstream/398100
Upstream sequence
TCACCACCCATATTCATGCCCTCCTCATCTAGGTCCTGTCCACTGTCATAGCGAGTCTTTTTCTTGGGATCAGAGAGGATAGTAAAGGCCTCTCCAACTT
Downstream sequence
ACAACAACACTAAGGGGCTATTAAAATGCTCTGGTTGGATGTTAATTTGATAATAGATCATTTTGCTTGAAATAGATGGGCTCTTAAGTTAGGCTTAGAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate