Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017988
Fusion event
HBV-APOC3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1344
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
End
116701286/116830570 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-661 ; hsa-mir-4696 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-4267 ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-4432 ; hsa-mir-6818-3p ; hsa-mir-548s ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-3613-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-34a-3p ; hsa-mir-6732-3p ; hsa-mir-5583-3p ; hsa-mir-548c-3p ; hsa-mir-4271 ; hsa-mir-1273g-3p ; hsa-mir-4252
Nearest miRNA
hsa-mir-10392/Upstream/3380482; hsa-let-7a-2/Downstream/1813430;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/8926, chr11-CpG: 48/Downstream/5195
Upstream sequence
TCAACCCCAGGCTGGGTCCTTACTTTAGCTGTTTTCCCAAGGCGGAGCCTTCAAACTGGGACACATAGTCTCTGCCGCTGTCTTTGAGCACATCCACGTA
Downstream sequence
tccaggaagtagatactattaatcaggcaaattttacagatgagaaaaactgttttttaaagagattaacttgcaacaaagaggtcacactgcctccaat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13