ARRDC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017989
Fusion event
HBV-ARRDC2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
18125295/18014486 (Hg38)
End
18125295/18014486 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ARRDC2
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-194-5p ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-4660 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-500b-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p
Nearest miRNA
hsa-mir-10395/Upstream/2564878; hsa-let-7e/Downstream/267591;
Nearest TSS
ENST00000633603/Upstream/4937; ENST00000601226/Downstream/72444;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4455, chr19-CpG: 30/Downstream/37354
Upstream sequence
GCACACAGTGACCCCCTTCCTTATTCCTCCCCACAGGGAGTGGTTTTCAGAGACATTTCAGAAAGTGAAGGAGAAACTCAAGATTGACTCATGAGGACCT
Downstream sequence
ttttctgtttgtttttgtttttcagaaggagtcttgctgtgtcgctcaggcatagtgtagagtgtagtggtgtgatctcagctcactacaacctccacct
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate