Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017991
Fusion event
HBV-DNAH9 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1752
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
Start
End
11550725/11647408 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-665 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-5582-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4451 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4468 ; hsa-mir-6840-3p ; hsa-mir-4459 ; hsa-mir-4756-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-129-5p ; hsa-mir-4524a-3p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-4797-5p ; hsa-mir-5007-5p ; hsa-mir-7855-5p
Nearest miRNA
hsa-mir-1253/Upstream/3460404; hsa-mir-10226/Downstream/434491;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/48397, chr17-CpG: 67/Downstream/349717
Upstream sequence
ccctcacaaactcacacacactcacacactcacacaTTGCTCACTTCACTCAAAAACACACATTTGCACACACTCATGACCACGCTCTGCTGTACCCACT
Downstream sequence
TTTTTATAAGAACATGCAAAAGATTCTCAAAATAATTTGTACCCTGGATTTCTTTTTTGGGATGAATTCTGGGGTGTAGTGTTTTATTAAGTTGTCCATG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13