GCC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017992
Fusion event
HBV-GCC2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
969
Host Sequence
Chromosome
chr2
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
109127516/108511060 (Hg38)
End
109127516/108511060 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
GCC2
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-193b-3p ; hsa-mir-5197-3p ; hsa-mir-9-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-186-5p ; hsa-mir-3133
Nearest miRNA
hsa-mir-1285-2/Upstream/6078694; hsa-mir-10b/Downstream/630430;
Nearest TSS
ENST00000437798/Upstream/17759; ENST00000474038/Downstream/23122;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/61562, chr2-CpG: 90/Downstream/22814
Upstream sequence
ggggggggggggggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggagggggggggggga
Downstream sequence
gccgggcgcgatggctcacacctgtcatcccggcacttagggaggccagggtgggcagatcacctgaggtcaggagtccaagaccagcctggccaatatg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate