Basic Information
VIS ID
TVIS10017993
Fusion event
HBV-chr1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1796
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
178594295/178625160 (Hg38)
End
178594295/178625160 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1595715; hsa-mir-1182/Downstream/52589;
Nearest TSS
ENST00000473358/Upstream/82364; ENST00000608190/Downstream/26546;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/81939, chr1-CpG: 113/Downstream/99673
Upstream sequence
GAACTGTTATAGTCTCTCAGGAACAAATCCTTCTGTTCTTAGCCATTCCTATTCTTTTGTATTGATGTTGTTGTGATCCATGCATCTTCTACTTTTAGGT
Downstream sequence
GATAATCTGCAACAACAAAAATTAAGAAATCCCTGACTTTTGTAGAATTCCCACTGTCAAATTCTCACTGACTTATGAGTGTGAGAGAAGTTATCTTTTG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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